Bein is a workflow manager and miniature LIMS system built in the Bioinformatics and Biostatistics Core Facility of the EPFL. It fills the gap for the working scientist between the classical shell and big workflow managers like Galaxy and major LIMS systems like OpenBIS. More...
Bein is a Python library. It should run on any Unix system with Python >=2.5, though the utilities library also requires numpy, scipy, matplotlib, and pysam. More...
- Bein's GitHub repository
- Ruffus: when bein's executions aren't sophisticated enough, and you have an external file store.
- Sumatra: tracks the source code and parameters of scripts, particularly for simulations. Can be a nice complement to bein.
- Galaxy: a comprehensive, graphical workflow manager after the classical pattern.